oft_io.F90 File Reference

#include "local.h"

Data Types
interface	hdf5_read
	Read data from an HDF5 file. More...
type	hdf5_rst
	HDF5 restart structure. More...
interface	hdf5_write
	Write data to an HDF5 file. More...
type	oft_bin_file
	Binary output file object. More...
type	xdmf_plot_file
	Information for XDMF plotting groups in HDF5 plot file. More...

Modules
module	oft_io
	HDF5 file manipulation for output and restart data.

Functions/Subroutines
subroutine	bin_file_add (self, fieldname, type_str, desc, fsize)
	Add field to Open FUSION Toolkit binary I/O file.
subroutine	bin_file_add_comm (self, comment)
	Add comment to Open FUSION Toolkit binary I/O file.
subroutine	bin_file_close (self)
	Close Open FUSION Toolkit binary I/O file.
subroutine	bin_file_flush (self)
	Flush I/O buffer for Open FUSION Toolkit binary I/O file.
subroutine	bin_file_header (self)
	Write header for Open FUSION Toolkit binary I/O file.
subroutine	bin_file_open (self)
	Open Open FUSION Toolkit binary I/O file.
subroutine	bin_file_setup (self, filename, desc)
	Setup Open FUSION Toolkit binary I/O file.
subroutine	bin_file_write (self, data_i4, data_i8, data_r4, data_r8)
	Write single set of data to Open FUSION Toolkit binary I/O file.
subroutine	hdf5_add_string_attribute (filename, objname, aname, attr_data)
	Add string attribute to existing object (group or dataset).
subroutine	hdf5_create_file (filename, persistent_space_tracking)
	Create an empty HDF5 output file.
subroutine	hdf5_create_group (filename, group_name)
	Create HDF5 group in existing file.
subroutine	hdf5_delete_obj (filename, obj_path)
	Delete HDF5 object in existing file.
logical function	hdf5_field_exist (filepath, path)
	Test for exitence of a field in a HDF5 file.
subroutine	hdf5_field_get_sizes (filepath, path, ndims, dim_sizes)
	Test for exitence of a field in a HDF5 file.
integer(hssize_t) function, dimension(2)	hdf5_file_size (filepath)
	Test for exitence of a field in a HDF5 file.
character(len=oft_mpi_plen) function	hdf5_proc_str (proc_ind)
	Get processor rank as string for HDF5 I/O.
subroutine	hdf5_read_1d_i4 (array, filename, path, success)
	integer(i8) 1D array implementation of hdf5_write
subroutine	hdf5_read_1d_r8 (array, filename, path, success)
	real(r8) 1D array implementation of hdf5_write
subroutine	hdf5_read_2d_i4 (array, filename, path, success)
	integer(i4) 2D array implementation of hdf5_write
subroutine	hdf5_read_2d_r8 (array, filename, path, success)
	real(r8) 2D array implementation of hdf5_write
subroutine	hdf5_read_rst (rst_info, filename, path, success)
	FE vector implementation of hdf5_write.
subroutine	hdf5_read_scalar_i4 (val, filename, path, success)
	integer(i4) scalar implementation of hdf5_read
subroutine	hdf5_read_scalar_r8 (val, filename, path, success)
	real(r8) scalar implementation of hdf5_read
subroutine	hdf5_rst_destroy (self)
	Deallocate internal storage fields created for HDF5 collective I/O.
character(len=oft_mpi_plen) function	hdf5_ts_str (ts_in)
	Get timestep index as string for HDF5 I/O.
subroutine	hdf5_write_1d_i4 (array, filename, path)
	integer(i4) 1D array implementation of hdf5_write
subroutine	hdf5_write_1d_r8 (array, filename, path, single_prec)
	real(r8) 1D array implementation of hdf5_write
subroutine	hdf5_write_2d_i4 (array, filename, path)
	integer(i4) 2D array implementation of hdf5_write
subroutine	hdf5_write_2d_r8 (array, filename, path, single_prec)
	real(r8) 2D array implementation of hdf5_write
subroutine	hdf5_write_rst (rst_info, filename, path)
	FE vector implementation of hdf5_write.
subroutine	hdf5_write_scalar_i4 (val, filename, path)
	integer(i4) scalar implementation of hdf5_write
subroutine	hdf5_write_scalar_r8 (val, filename, path, single_prec)
	real(r8) scalar implementation of hdf5_write
logical function	oft_file_exist (filepath)
	Test for exitence of a file.
subroutine	xdmf_add_mesh (self, mesh_type, pt_list, cell_list, grid_name)
	Needs docs.
subroutine	xdmf_add_timestep (self, t)
	Adds a timestep to the dump metadata file.
subroutine	xdmf_clear_timesteps (self, clear_static)
	Clear existing timesteps and reset to static fields.
subroutine	xdmf_write_scalar (self, data, grid_name, path, centering, single_prec)
	Write scalar field to plot file.
subroutine	xdmf_write_vector (self, data, grid_name, path, centering, single_prec)
	Write vector field to plot file.
subroutine	xmdf_setup (self, group_name, basepath, persistent_space_tracking)
	Needs docs.

Variables
integer(i4)	hdf5_fcount =0
	Number of HDF5 fields.
integer(i4), parameter	hdf5_flen =40
	Maximum size of HDF5 filenames.
integer(i4), parameter	hdf5_nl =800
	Maximum number of HDF5 fields.
integer(i4)	hdf5_ts =0
	Number of HDF5 time steps.