| __init__(self, t_init, t_final, eqtimes, g_eqdsk_arr, tokamaker_obj, tx_dt=0.1, tm_times=None, last_surface_factor=0.99, truncate_eq=False) | TokaMaker_TORAX | |
| _apply_tm_coil_reg(self, targets=None) | TokaMaker_TORAX | protected |
| _apply_tx_set_overrides(self, myconfig) | TokaMaker_TORAX | protected |
| _calc_tx_ffp_ni(self, i) | TokaMaker_TORAX | protected |
| _capture_relax_tx_profiles_from_datatree(self, data_tree, time_val=None) | TokaMaker_TORAX | protected |
| _capture_steady_state_tx_seed(self, data_tree) | TokaMaker_TORAX | protected |
| _chi_max | TokaMaker_TORAX | protected |
| _chi_min | TokaMaker_TORAX | protected |
| _cocos | TokaMaker_TORAX | protected |
| _coil_bounds | TokaMaker_TORAX | protected |
| _coil_reg_config | TokaMaker_TORAX | protected |
| _coupling_iteration_is_first(self) | TokaMaker_TORAX | protected |
| _current_loop | TokaMaker_TORAX | protected |
| _data_tree | TokaMaker_TORAX | protected |
| _De_max | TokaMaker_TORAX | protected |
| _De_min | TokaMaker_TORAX | protected |
| _debug_mode | TokaMaker_TORAX | protected |
| _diagnostics | TokaMaker_TORAX | protected |
| _diverted_flags | TokaMaker_TORAX | protected |
| _diverted_times | TokaMaker_TORAX | protected |
| _ecrh_heating | TokaMaker_TORAX | protected |
| _ecrh_loc | TokaMaker_TORAX | protected |
| _ecrh_width | TokaMaker_TORAX | protected |
| _enable_ei_exchange | TokaMaker_TORAX | protected |
| _enable_fusion | TokaMaker_TORAX | protected |
| _eqdsk_dir | TokaMaker_TORAX | protected |
| _eqdsk_dir_is_temp | TokaMaker_TORAX | protected |
| _eqdsk_skip | TokaMaker_TORAX | protected |
| _eqtimes | TokaMaker_TORAX | protected |
| _evolve_current | TokaMaker_TORAX | protected |
| _evolve_density | TokaMaker_TORAX | protected |
| _evolve_Te | TokaMaker_TORAX | protected |
| _evolve_Ti | TokaMaker_TORAX | protected |
| _extract_tx_profile(self, data_tree, var_name, time, load_into_state='state', normalize=False, profile_type='linterp') | TokaMaker_TORAX | protected |
| _extract_tx_scalar(self, data_tree, var_name, time, source='scalars', scale=1.0) | TokaMaker_TORAX | protected |
| _extract_tx_scalar_at_rho(self, data_tree, var_name, time, rho_val, rho_coord='rho_norm', scale=1.0) | TokaMaker_TORAX | protected |
| _extract_tx_scalar_at_rho_timeseries(self, data_tree, var_name, rho_val, rho_coord='rho_norm', scale=1.0) | TokaMaker_TORAX | protected |
| _extract_tx_scalar_timeseries(self, data_tree, var_name, source='scalars', scale=1.0) | TokaMaker_TORAX | protected |
| _flatten_time_dependent(config) | TokaMaker_TORAX | protectedstatic |
| _flattop | TokaMaker_TORAX | protected |
| _fly_loop0 | TokaMaker_TORAX | protected |
| _fname_out | TokaMaker_TORAX | protected |
| _generic_heat | TokaMaker_TORAX | protected |
| _generic_heat_loc | TokaMaker_TORAX | protected |
| _generic_heat_width | TokaMaker_TORAX | protected |
| _generic_particle_location | TokaMaker_TORAX | protected |
| _generic_particle_s_total | TokaMaker_TORAX | protected |
| _generic_particle_width | TokaMaker_TORAX | protected |
| _get_time_window(self, time, tx_times) | TokaMaker_TORAX | protected |
| _get_tx_config(self) | TokaMaker_TORAX | protected |
| _gp_dl | TokaMaker_TORAX | protected |
| _gp_s | TokaMaker_TORAX | protected |
| _impurity | TokaMaker_TORAX | protected |
| _init_files | TokaMaker_TORAX | protected |
| _interp_tx_profile_onto_psi(self, data_tree, var_name, time, profile_type='linterp') | TokaMaker_TORAX | protected |
| _Ip | TokaMaker_TORAX | protected |
| _Ip_seed | TokaMaker_TORAX | protected |
| _last_surface_factor | TokaMaker_TORAX | protected |
| _loaded_config | TokaMaker_TORAX | protected |
| _log(self, msg) | TokaMaker_TORAX | protected |
| _log_file | TokaMaker_TORAX | protected |
| _logging_configured | TokaMaker_TORAX | protected |
| _loop0_coarse_tx | TokaMaker_TORAX | protected |
| _loop0_coarse_tx_main_scope(self) | TokaMaker_TORAX | protected |
| _loop0_coarse_tx_relax_scope(self, stage) | TokaMaker_TORAX | protected |
| _loop0_relax_coarse_tx | TokaMaker_TORAX | protected |
| _loop0_tm_solve_indices(n_tm, stride) | TokaMaker_TORAX | protectedstatic |
| _loop0_tm_stride | TokaMaker_TORAX | protected |
| _loop0_tx_face_points | TokaMaker_TORAX | protected |
| _main_ion | TokaMaker_TORAX | protected |
| _n_e | TokaMaker_TORAX | protected |
| _n_e_init | TokaMaker_TORAX | protected |
| _n_e_ped | TokaMaker_TORAX | protected |
| _nbar | TokaMaker_TORAX | protected |
| _nbi_heating | TokaMaker_TORAX | protected |
| _nbi_loc | TokaMaker_TORAX | protected |
| _ne_right_bc | TokaMaker_TORAX | protected |
| _normalize_to_nbar | TokaMaker_TORAX | protected |
| _numpy_to_plain_python(obj) | TokaMaker_TORAX | protectedstatic |
| _ohmic_power | TokaMaker_TORAX | protected |
| _out_dir | TokaMaker_TORAX | protected |
| _output_file_tag | TokaMaker_TORAX | protected |
| _output_mode | TokaMaker_TORAX | protected |
| _pax_seed | TokaMaker_TORAX | protected |
| _ped_top | TokaMaker_TORAX | protected |
| _pedestal_config | TokaMaker_TORAX | protected |
| _pellet_deposition_location | TokaMaker_TORAX | protected |
| _pellet_s_total | TokaMaker_TORAX | protected |
| _pellet_width | TokaMaker_TORAX | protected |
| _pop_tx_grid(self) | TokaMaker_TORAX | protected |
| _print(self, msg) | TokaMaker_TORAX | protected |
| _psi_axis_seed | TokaMaker_TORAX | protected |
| _psi_init | TokaMaker_TORAX | protected |
| _psi_lcfs_seed | TokaMaker_TORAX | protected |
| _psi_N | TokaMaker_TORAX | protected |
| _psi_warm_start | TokaMaker_TORAX | protected |
| _push_tx_grid(self) | TokaMaker_TORAX | protected |
| _quiet_tm(self) | TokaMaker_TORAX | protected |
| _relax | TokaMaker_TORAX | protected |
| _relax_duration | TokaMaker_TORAX | protected |
| _relax_flat_profile_to_rho_y(profile_val) | TokaMaker_TORAX | protectedstatic |
| _relax_kinetics | TokaMaker_TORAX | protected |
| _relax_mainrun_profile_history | TokaMaker_TORAX | protected |
| _relax_profiles_snapshot | TokaMaker_TORAX | protected |
| _res_update(self, data_tree) | TokaMaker_TORAX | protected |
| _results | TokaMaker_TORAX | protected |
| _run_name | TokaMaker_TORAX | protected |
| _run_timestamp | TokaMaker_TORAX | protected |
| _run_tm(self) | TokaMaker_TORAX | protected |
| _run_tx(self) | TokaMaker_TORAX | protected |
| _run_tx_relax(self, *, stage, eqdsk_path, prescribed_profiles) | TokaMaker_TORAX | protected |
| _save_outputs | TokaMaker_TORAX | protected |
| _set_pedestal | TokaMaker_TORAX | protected |
| _skip_bad_init_eqdsks | TokaMaker_TORAX | protected |
| _state | TokaMaker_TORAX | protected |
| _steady_state_mode | TokaMaker_TORAX | protected |
| _steady_state_tm_psi_seed | TokaMaker_TORAX | protected |
| _steady_state_tx_seed | TokaMaker_TORAX | protected |
| _strike_point_targets | TokaMaker_TORAX | protected |
| _t_ave_causal | TokaMaker_TORAX | protected |
| _t_ave_ignore_start | TokaMaker_TORAX | protected |
| _t_ave_toggle | TokaMaker_TORAX | protected |
| _t_ave_window | TokaMaker_TORAX | protected |
| _T_e | TokaMaker_TORAX | protected |
| _T_e_init | TokaMaker_TORAX | protected |
| _T_e_ped | TokaMaker_TORAX | protected |
| _t_final | TokaMaker_TORAX | protected |
| _T_i | TokaMaker_TORAX | protected |
| _T_i_init | TokaMaker_TORAX | protected |
| _T_i_ped | TokaMaker_TORAX | protected |
| _t_init | TokaMaker_TORAX | protected |
| _Te_right_bc | TokaMaker_TORAX | protected |
| _test_eqdsk_tx_config(self, eqdsk, *, quiet=False) | TokaMaker_TORAX | protected |
| _Ti_right_bc | TokaMaker_TORAX | protected |
| _tm | TokaMaker_TORAX | protected |
| _tm_prof_input_ped_smooth(self, ffp_prof, pp_prof, p_prof, transition_psi_N=0.6, gauss_sigma=8, blend_width=0.02, sav_window=41, sav_order=3) | TokaMaker_TORAX | protected |
| _tm_prof_input_power_flux(self, ffp_prof, pp_prof) | TokaMaker_TORAX | protected |
| _tm_prof_input_raw(self, ffp_prof, pp_prof) | TokaMaker_TORAX | protected |
| _tm_prof_input_sign_flip(self, ffp_prof, pp_prof) | TokaMaker_TORAX | protected |
| _tm_psi_on_nodes | TokaMaker_TORAX | protected |
| _tm_times | TokaMaker_TORAX | protected |
| _tm_update(self, i) | TokaMaker_TORAX | protected |
| _truncate_eq | TokaMaker_TORAX | protected |
| _tx_config_merge(base, override) | TokaMaker_TORAX | protectedstatic |
| _tx_dt | TokaMaker_TORAX | protected |
| _tx_grid | TokaMaker_TORAX | protected |
| _tx_grid_stash | TokaMaker_TORAX | protected |
| _tx_grid_type | TokaMaker_TORAX | protected |
| _tx_update(self, i, data_tree) | TokaMaker_TORAX | protected |
| _use_nbi_current | TokaMaker_TORAX | protected |
| _Ve_max | TokaMaker_TORAX | protected |
| _Ve_min | TokaMaker_TORAX | protected |
| _x_point_targets | TokaMaker_TORAX | protected |
| _x_point_weight | TokaMaker_TORAX | protected |
| _Zeff | TokaMaker_TORAX | protected |
| _zz_doxygen_dummy(self) | TokaMaker_TORAX | protected |
| configure_redirect_to_log(self) | TokaMaker_TORAX | |
| fly(self, run_name='tmp', convergence_threshold=-1.0, max_loop=3, output_mode=False, skip_bad_init_eqdsks=False, initial_relax=True, relax=False, relax_kinetics=False, relax_duration=0.1, t_ave_toggle='off', t_ave_window=0.5, t_ave_causal=True, t_ave_ignore_start=0.25, loop0=False, steady_state_mode=False) | TokaMaker_TORAX | |
| get_final_timepoint_results(self, eqdsk_save_dir=None) | TokaMaker_TORAX | |
| lcfs | TokaMaker_TORAX | |
| load_pedestal_config(self, pedestal_config) | TokaMaker_TORAX | |
| load_TORAX_config(self, config) | TokaMaker_TORAX | |
| make_movie(self, save_path=None, **kwargs) | TokaMaker_TORAX | |
| plot_coils(self, save_path=None, display=True, **kwargs) | TokaMaker_TORAX | |
| plot_lcfs_evolution(self, save_path=None, display=True, one_plot=False, **kwargs) | TokaMaker_TORAX | |
| plot_profile_evolution(self, save_path=None, display=True, one_plot=False, **kwargs) | TokaMaker_TORAX | |
| plot_profiles(self, **kwargs) | TokaMaker_TORAX | |
| plot_scalars(self, save_path=None, display=True, **kwargs) | TokaMaker_TORAX | |
| results | TokaMaker_TORAX | |
| save_res(self) | TokaMaker_TORAX | |
| save_state(self, fname) | TokaMaker_TORAX | |
| set_evolve(self, density=True, Ti=True, Te=True, current=True) | TokaMaker_TORAX | |
| set_fueling(self, gas_puff_S_total=None, gas_puff_decay_length=None, pellet_deposition_location=None, pellet_width=None, pellet_S_total=None, generic_particle_location=None, generic_particle_width=None, generic_particle_S_total=None) | TokaMaker_TORAX | |
| set_heating(self, generic_heat=None, generic_heat_loc=None, generic_heat_width=0.25, nbi_current=False, ecrh=None, ecrh_loc=None, ecrh_width=0.1, ohmic=None, fusion=True, ei_exchange=True) | TokaMaker_TORAX | |
| set_Ip(self, Ip) | TokaMaker_TORAX | |
| set_ne(self, n_e, right_bc=None) | TokaMaker_TORAX | |
| set_pedestal(self, set_pedestal=False, T_i_ped=None, T_e_ped=None, n_e_ped=None, ped_top=0.90) | TokaMaker_TORAX | |
| set_plasma_composition(self, Zeff=None, main_ion=None, impurity=None) | TokaMaker_TORAX | |
| set_Te(self, T_e, right_bc=None) | TokaMaker_TORAX | |
| set_Ti(self, T_i, right_bc=None) | TokaMaker_TORAX | |
| set_TokaMaker_coil_reg(self, coil_bounds=None, updownsym=False, default_weight=1.0E-1, disable_coils=None, disable_weight=1.0E4, symmetry_weight=1.0E3, disable_virtual_vsc=True, vsc_weight=1.0E4) | TokaMaker_TORAX | |
| set_TORAX_grid(self, grid_type, grid) | TokaMaker_TORAX | |
| set_transport_coefs(self, chi_min=None, chi_max=None, De_min=None, De_max=None, Ve_min=None, Ve_max=None) | TokaMaker_TORAX | |
| set_x_points(self, diverted_times=None, x_point_targets=None, x_point_weight=100.0, strike_point_targets=None) | TokaMaker_TORAX | |
| state | TokaMaker_TORAX | |
| summary(self, **kwargs) | TokaMaker_TORAX | |